Subject_procedures¶

Model definitions¶

Description of a non-surgical procedure performed on a subject

Field	Type	Title (Description)
`start_date`	`datetime.date`	Start date
`experimenters`	`Optional[List[str]]`	experimenter(s)
`ethics_review_id`	`str`	Ethics review ID
`description`	`str`	Description
`notes`	`Optional[str]`	Notes
`protocol_id`	`Optional[str]`	Protocol ID (DOI for protocols.io)

Injection procedure performed outside of surgery, which may include one or more injections at different locations/depths

Field	Type	Title (Description)
`start_date`	`datetime.date`	Start date
`ethics_review_id`	`str`	Ethics review ID
`protocol_id`	`Optional[str]`	Protocol ID (DOI for protocols.io)
`injections`	List[Injection]	Injections
`notes`	`Optional[str]`	Notes

Description of subject procedures performed at one time

Field	Type	Title (Description)
`start_date`	`datetime.date`	Start date
`experimenters`	`Optional[List[str]]`	experimenter(s)
`ethics_review_id`	`Optional[str]`	Ethics review ID
`animal_weight_prior`	`Optional[float]`	Animal weight (g) (Animal weight before procedure)
`animal_weight_post`	`Optional[float]`	Animal weight (g) (Animal weight after procedure)
`weight_unit`	MassUnit	Weight unit
`anaesthesia`	Optional[Anaesthetic]	Anaesthesia
`workstation_id`	`Optional[str]`	Workstation ID
`coordinate_system`	Optional[CoordinateSystem]	Surgery coordinate system (Only required when the Surgery.coordinate_system is different from the Procedures.coordinate_system)
`measured_coordinates`	Optional[Dict[Origin, Translation]]	Measured coordinates (Coordinates measured during the procedure, for example Bregma and Lambda)
`procedures`	List[CatheterImplant or Craniotomy or ProbeImplant or Headframe or BrainInjection or Injection or MyomatrixInsertion or GenericSurgeryProcedure or Perfusion or SampleCollection]	Procedures
`notes`	`Optional[str]`	Notes
`protocol_id`	`Optional[str]`	Protocol ID (DOI for protocols.io)

Description of an animal training protocol

Field	Type	Title (Description)
`training_name`	`str`	Training protocol name
`protocol_id`	`Optional[str]`	Training protocol ID
`start_date`	`datetime.date`	Training protocol start date
`end_date`	`Optional[datetime.date]`	Training protocol end date
`curriculum_code`	Optional[Code]	Curriculum code (Code describing the directed graph used for the training curriculum)
`notes`	`Optional[str]`	Notes

Description of a water restriction procedure

Field	Type	Title (Description)
`ethics_review_id`	`str`	Ethics review ID
`target_fraction_weight`	`int`	Target fraction weight (%)
`target_fraction_weight_unit`	UnitlessUnit	Target fraction weight unit
`minimum_water_per_day`	`float`	Minimum water per day (mL)
`minimum_water_per_day_unit`	VolumeUnit	Minimum water per day unit
`baseline_weight`	`float`	Baseline weight (g) (Weight at start of water restriction)
`weight_unit`	MassUnit	Weight unit
`start_date`	`datetime.date`	Water restriction start date
`end_date`	`Optional[datetime.date]`	Water restriction end date