Injection_procedures¶

Model definitions¶

Injection¶

Description of an injection procedure

Field	Type	Title (Description)
`injection_materials`	List[ViralMaterial or NonViralMaterial]	Injection material
`targeted_structure`	Optional[MouseAnatomyModel]	Injection target (Use InjectionTargets)
`relative_position`	Optional[List[AnatomicalRelative]]	Relative position
`dynamics`	List[InjectionDynamics]	Injection dynamics (List of injection events, one per location/depth)
`protocol_id`	`Optional[str]`	Protocol ID (DOI for protocols.io)

InjectionDynamics¶

Description of the volume and rate of an injection

Field	Type	Title (Description)
`profile`	InjectionProfile	Injection profile
`volume`	`Optional[float]`	Injection volume
`volume_unit`	Optional[VolumeUnit]	Injection volume unit
`duration`	`Optional[float]`	Injection duration
`duration_unit`	Optional[TimeUnit]	Injection duration unit
`injection_current`	`Optional[float]`	Injection current (uA)
`injection_current_unit`	Optional[CurrentUnit]	Injection current unit
`alternating_current`	`Optional[str]`	Alternating current

InjectionProfile¶

Injection profile

Name	Value
`BOLUS`	`Bolus`
`CONTINUOUS`	`Continuous`
`PULSED`	`Pulsed`

NonViralMaterial¶

Description of a non-viral injection material

Field	Type	Title (Description)
`concentration`	`Optional[float]`	Concentration (Must provide concentration unit)
`concentration_unit`	`Optional[str]`	Concentration unit (For example, mg/mL)
`name`	`str`	Name
`source`	Organization	Source
`rrid`	Optional[PIDName]	Research Resource ID
`lot_number`	`Optional[str]`	Lot number
`expiration_date`	`Optional[datetime.date]`	Lot expiration date

TarsVirusIdentifiers¶

TARS data for a viral prep

Field	Type	Title (Description)
`virus_tars_id`	`Optional[str]`	Virus ID, usually begins ‘AiV’
`plasmid_tars_alias`	`Optional[List[str]]`	List of plasmid aliases (Alias used to reference the plasmid, usually begins ‘AiP’)
`prep_lot_number`	`str`	Preparation lot number
`prep_date`	`Optional[datetime.date]`	Preparation lot date (Date this prep lot was titered)
`prep_type`	Optional[VirusPrepType]	Viral prep type
`prep_protocol`	`Optional[str]`	Prep protocol

ViralMaterial¶

Description of viral material for injections

Field	Type	Title (Description)
`name`	`str`	Full genome name (Full genome for virus construct)
`tars_identifiers`	Optional[TarsVirusIdentifiers]	TARS IDs (TARS database identifiers)
`addgene_id`	Optional[PIDName]	Addgene id (Registry must be Addgene)
`titer`	`Optional[int]`	Effective titer (Final titer of viral material, accounting for mixture/diliution)
`titer_unit`	`Optional[str]`	Titer unit (For example, gc/mL)

VirusPrepType¶

Type of virus preparation

Name	Value
`CRUDE`	`Crude`
`PURIFIED`	`Purified`