Subjects

Model definitions

BreedingInfo

Description of breeding info for subject

Field	Type	Description
breeding_group	str
maternal_id	str
maternal_genotype	str
paternal_id	str
paternal_genotype	str

HomeCageEnrichment

Materials provided in animal home cage

Name	Value
NO_ENRICHMENT	No enrichment
PLASTIC_SHELTER	Plastic shelter
PLASTIC_TUBE	Plastic tube
RUNNING_WHEEL	Running wheel
OTHER	Other

Housing

Description of subject housing

Field	Type	Description
cage_id	Optional[str]
room_id	Optional[str]
light_cycle	Optional[LightCycle]
home_cage_enrichment	List[HomeCageEnrichment]
cohoused_subjects	List[str]	List of IDs of other subjects housed in same cage

HumanSubject

Description of a human subject

Field	Type	Description
sex	Sex
year_of_birth	int
source	Organization	Where the subject was acquired from.

LightCycle

Description of vivarium light cycle times

Field	Type	Description
lights_on_time	datetime.time	Time in UTC that lights were turned on
lights_off_time	datetime.time	Time in UTC that lights were turned off

MouseSubject

Description of a mouse subject

Field	Type	Description
sex	Sex
date_of_birth	datetime.date
strain	Strain
species	Species
alleles	List[PIDName]	Allele names and persistent IDs
genotype	str	Genotype of the animal providing both alleles
breeding_info	Optional[BreedingInfo]
wellness_reports	List[WellnessReport]
housing	Optional[Housing]
source	Organization	Where the subject was acquired from. If bred in-house, use Allen Institute.
restrictions	Optional[str]	Any restrictions on use or publishing based on subject source
rrid	Optional[PIDName]	RRID of mouse if acquired from supplier

Sex

Subject sex name

Name	Value
FEMALE	Female
MALE	Male

WellnessReport

Wellness report on animal health

Field	Type	Description
date	datetime.date
report	str