Reagent

Model definitions

FluorescentStain

Description of a fluorescent stain

Field	Type	Description
probe	GeneProbe or ProteinProbe or SmallMoleculeProbe
stain_type	StainType
fluorophore	Fluorophore
initiator_name	Optional[str]
name	str
source	Organization
rrid	Optional[PIDName]
lot_number	Optional[str]
expiration_date	Optional[datetime.date]

Fluorophore

Flurophore used in HCR, Immunolabeling, etc

Field	Type	Description
fluorophore_type	FluorophoreType
excitation_wavelength	int
excitation_wavelength_unit	SizeUnit

GeneProbe

Description of a set of oligonucleotide probes targeting a specific gene

Field	Type	Description
gene	PIDName
probes	Optional[List[OligoProbe]]

GeneProbeSet

set of probes used in BarSEQ

Field	Type	Description
gene_probes	List[GeneProbe]
name	str
source	Organization
rrid	Optional[PIDName]
lot_number	Optional[str]
expiration_date	Optional[datetime.date]

OligoProbe

Description of an oligonucleotide probe

Field	Type	Description
name	str
sequence	str

ProbeReagent

Description of a probe used as a reagent

Field	Type	Description
target	GeneProbe or ProteinProbe or SmallMoleculeProbe
name	str
source	Organization
rrid	Optional[PIDName]
lot_number	Optional[str]
expiration_date	Optional[datetime.date]

ProteinProbe

Description of a protein probe including antibodies

Field	Type	Description
protein	PIDName
species	Optional[Species]
mass	float
mass_unit	MassUnit
sequence	Optional[str]

Reagent

Description of reagent used in procedure

Field	Type	Description
name	str
source	Organization
rrid	Optional[PIDName]
lot_number	Optional[str]
expiration_date	Optional[datetime.date]

SmallMoleculeProbe

Description of a small molecule probe

Field	Type	Description
molecule	PIDName
mass	float
mass_unit	MassUnit