Subject_procedures¶

Model definitions¶

GenericSubjectProcedure¶

Description of a non-surgical procedure performed on a subject

Field	Type	Description
`start_date`	`datetime.date`
`experimenters`	Optional[List[Person]]
`ethics_review_id`	`str`
`protocol_id`	`Optional[str]`	DOI for protocols.io
`description`	`str`
`notes`	`Optional[str]`

Surgery¶

Description of subject procedures performed at one time

Field	Type	Description
`protocol_id`	`Optional[str]`	DOI for protocols.io
`start_date`	`datetime.date`
`experimenters`	Optional[List[Person]]
`ethics_review_id`	`Optional[str]`
`animal_weight_prior`	`Optional[float]`	Animal weight before procedure
`animal_weight_post`	`Optional[float]`	Animal weight after procedure
`weight_unit`	MassUnit
`anaesthesia`	Optional[Anaesthetic]
`workstation_id`	`Optional[str]`
`coordinate_system`	Optional[CoordinateSystem]	Only required when the Surgery.coordinate_system is different from the Procedures.coordinate_system
`measured_coordinates`	Optional[Dict[Origin, Translation]]	Coordinates measured during the procedure, for example Bregma and Lambda
`procedures`	List[CatheterImplant or Craniotomy or ProbeImplant or Headframe or BrainInjection or Injection or MyomatrixInsertion or GenericSurgeryProcedure or Perfusion or SampleCollection]
`notes`	`Optional[str]`

TrainingProtocol¶

Description of an animal training protocol

Field	Type	Description
`training_name`	`str`
`protocol_id`	`Optional[str]`
`start_date`	`datetime.date`
`end_date`	`Optional[datetime.date]`
`curriculum_code`	Optional[Code]	Code describing the directed graph used for the training curriculum
`notes`	`Optional[str]`

WaterRestriction¶

Description of a water restriction procedure

Field	Type	Description
`ethics_review_id`	`str`
`target_fraction_weight`	`int`
`target_fraction_weight_unit`	UnitlessUnit
`minimum_water_per_day`	`float`
`minimum_water_per_day_unit`	VolumeUnit
`baseline_weight`	`float`	Weight at start of water restriction
`weight_unit`	MassUnit
`start_date`	`datetime.date`
`end_date`	`Optional[datetime.date]`