# Devices ## Model definitions ### AdditionalImagingDevice Description of additional devices | Field | Type | Title (Description) | |-------|------|-------------| | `imaging_device_type` | [ImagingDeviceType](../aind_data_schema_models/devices.md#imagingdevicetype) | Device type | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### AirPuffDevice Description of an air puff device | Field | Type | Title (Description) | |-------|------|-------------| | `diameter` | `float` | Spout diameter | | `diameter_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Size unit | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Arena Description of a rectangular arena | Field | Type | Title (Description) | |-------|------|-------------| | `size` | [Scale](coordinates.md#scale) | 3D Size | | `size_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Size unit | | `objects_in_arena` | List[[Device](#device)] | Objects in arena | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Camera Camera Detector | Field | Type | Title (Description) | |-------|------|-------------| | `detector_type` | [DetectorType](../aind_data_schema_models/devices.md#detectortype) | | | `manufacturer` | [Organization](../aind_data_schema_models/organizations.md#organization) | Manufacturer | | `data_interface` | [DataInterface](../aind_data_schema_models/devices.md#datainterface) | Data interface | | `cooling` | [Cooling](../aind_data_schema_models/devices.md#cooling) | Cooling | | `frame_rate` | `Optional[decimal.Decimal]` | Frame rate (Hz) (Frame rate being used) | | `frame_rate_unit` | Optional[[FrequencyUnit](../aind_data_schema_models/units.md#frequencyunit)] | Frame rate unit | | `immersion` | Optional[[ImmersionMedium](../aind_data_schema_models/devices.md#immersionmedium)] | Immersion | | `chroma` | Optional[[CameraChroma](../aind_data_schema_models/devices.md#camerachroma)] | Camera chroma | | `sensor_width` | `Optional[int]` | Width of the sensor (pixels) | | `sensor_height` | `Optional[int]` | Height of the sensor (pixels) | | `size_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Size unit | | `sensor_format` | `Optional[str]` | Sensor format | | `sensor_format_unit` | `Optional[str]` | Sensor format unit | | `bit_depth` | `Optional[int]` | Bit depth | | `bin_mode` | [BinMode](../aind_data_schema_models/devices.md#binmode) | Detector binning mode | | `bin_width` | `Optional[int]` | Bin width | | `bin_height` | `Optional[int]` | Bin height | | `bin_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Bin size unit | | `gain` | `Optional[decimal.Decimal]` | Gain | | `crop_offset_x` | `Optional[int]` | Crop offset x | | `crop_offset_y` | `Optional[int]` | Crop offset y | | `crop_width` | `Optional[int]` | Crop width | | `crop_height` | `Optional[int]` | Crop width | | `crop_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Crop size unit | | `recording_software` | Optional[[Software](identifiers.md#software)] | Recording software | | `driver` | Optional[[DeviceDriver](../aind_data_schema_models/devices.md#devicedriver)] | Driver | | `driver_version` | `Optional[str]` | Driver version | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### CameraAssembly Named assembly of a camera and lens (and optionally a filter) | Field | Type | Title (Description) | |-------|------|-------------| | `name` | `str` | Camera assembly name | | `target` | [CameraTarget](../aind_data_schema_models/devices.md#cameratarget) | Camera target | | `camera` | [Camera](#camera) | Camera | | `lens` | [Lens](#lens) | Lens | | `filter` | Optional[[Filter](#filter)] | Filter | | `relative_position` | List[[AnatomicalRelative](../aind_data_schema_models/coordinates.md#anatomicalrelative)] | Relative position | | `coordinate_system` | Optional[[CoordinateSystem](coordinates.md#coordinatesystem)] | Device coordinate system | | `transform` | Optional[List[[Translation](coordinates.md#translation) or [Rotation](coordinates.md#rotation) or [Scale](coordinates.md#scale) or [Affine](coordinates.md#affine)]] | Device to instrument transform (Position and orientation of the device in the instrument coordinate system) | ### Catheter Description of a catheter device | Field | Type | Title (Description) | |-------|------|-------------| | `catheter_material` | [CatheterMaterial](#cathetermaterial) | Catheter material | | `catheter_design` | [CatheterDesign](#catheterdesign) | Catheter design | | `catheter_port` | [CatheterPort](#catheterport) | Catheter port | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### CatheterDesign Type of catheter design | Name | Value | |------|-------| | `MAGNETIC` | `Magnetic` | | `NONMAGNETIC` | `Non-magnetic` | | `NA` | `N/A` | ### CatheterMaterial Type of catheter material | Name | Value | |------|-------| | `NAKED` | `Naked` | | `SILICONE` | `VAB silicone` | | `MESH` | `VAB mesh` | ### CatheterPort Type of catheter port | Name | Value | |------|-------| | `SINGLE` | `Single` | | `DOUBLE` | `Double` | ### Computer Description of a computer | Field | Type | Title (Description) | |-------|------|-------------| | `operating_system` | `Optional[str]` | Operating system | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### DAQChannel Named input or output channel on a DAQ device | Field | Type | Title (Description) | |-------|------|-------------| | `channel_name` | `str` | DAQ channel name | | `channel_type` | [DaqChannelType](../aind_data_schema_models/devices.md#daqchanneltype) | DAQ channel type | | `port` | `Optional[int]` | DAQ port | | `channel_index` | `Optional[int]` | **[DEPRECATED]** Use DAQChannel.port instead. DAQ channel index | | `sample_rate` | `Optional[decimal.Decimal]` | DAQ channel sample rate (Hz) | | `sample_rate_unit` | Optional[[FrequencyUnit](../aind_data_schema_models/units.md#frequencyunit)] | Sample rate unit | | `event_based_sampling` | `Optional[bool]` | Set to true if DAQ channel is sampled at irregular intervals | ### DAQDevice Data acquisition device containing multiple I/O channels | Field | Type | Title (Description) | |-------|------|-------------| | `data_interface` | [DataInterface](../aind_data_schema_models/devices.md#datainterface) | Type of connection to PC | | `manufacturer` | [Organization](../aind_data_schema_models/organizations.md#organization) | Manufacturer | | `channels` | List[[DAQChannel](#daqchannel)] | DAQ channels | | `firmware_version` | `Optional[str]` | Firmware version | | `hardware_version` | `Optional[str]` | Hardware version | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Detector Description of a generic detector | Field | Type | Title (Description) | |-------|------|-------------| | `detector_type` | [DetectorType](../aind_data_schema_models/devices.md#detectortype) | Detector Type | | `manufacturer` | [Organization](../aind_data_schema_models/organizations.md#organization) | Manufacturer | | `data_interface` | [DataInterface](../aind_data_schema_models/devices.md#datainterface) | Data interface | | `cooling` | [Cooling](../aind_data_schema_models/devices.md#cooling) | Cooling | | `frame_rate` | `Optional[decimal.Decimal]` | Frame rate (Hz) (Frame rate being used) | | `frame_rate_unit` | Optional[[FrequencyUnit](../aind_data_schema_models/units.md#frequencyunit)] | Frame rate unit | | `immersion` | Optional[[ImmersionMedium](../aind_data_schema_models/devices.md#immersionmedium)] | Immersion | | `chroma` | Optional[[CameraChroma](../aind_data_schema_models/devices.md#camerachroma)] | Camera chroma | | `sensor_width` | `Optional[int]` | Width of the sensor (pixels) | | `sensor_height` | `Optional[int]` | Height of the sensor (pixels) | | `size_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Size unit | | `sensor_format` | `Optional[str]` | Sensor format | | `sensor_format_unit` | `Optional[str]` | Sensor format unit | | `bit_depth` | `Optional[int]` | Bit depth | | `bin_mode` | [BinMode](../aind_data_schema_models/devices.md#binmode) | Detector binning mode | | `bin_width` | `Optional[int]` | Bin width | | `bin_height` | `Optional[int]` | Bin height | | `bin_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Bin size unit | | `gain` | `Optional[decimal.Decimal]` | Gain | | `crop_offset_x` | `Optional[int]` | Crop offset x | | `crop_offset_y` | `Optional[int]` | Crop offset y | | `crop_width` | `Optional[int]` | Crop width | | `crop_height` | `Optional[int]` | Crop width | | `crop_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Crop size unit | | `recording_software` | Optional[[Software](identifiers.md#software)] | Recording software | | `driver` | Optional[[DeviceDriver](../aind_data_schema_models/devices.md#devicedriver)] | Driver | | `driver_version` | `Optional[str]` | Driver version | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Device Generic device | Field | Type | Title (Description) | |-------|------|-------------| | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### DevicePosition Position class for devices | Field | Type | Title (Description) | |-------|------|-------------| | `relative_position` | List[[AnatomicalRelative](../aind_data_schema_models/coordinates.md#anatomicalrelative)] | Relative position | | `coordinate_system` | Optional[[CoordinateSystem](coordinates.md#coordinatesystem)] | Device coordinate system | | `transform` | Optional[List[[Translation](coordinates.md#translation) or [Rotation](coordinates.md#rotation) or [Scale](coordinates.md#scale) or [Affine](coordinates.md#affine)]] | Device to instrument transform (Position and orientation of the device in the instrument coordinate system) | ### DigitalMicromirrorDevice Description of a Digital Micromirror Device (DMD) | Field | Type | Title (Description) | |-------|------|-------------| | `max_dmd_patterns` | `int` | Max DMD patterns | | `invert_pixel_values` | `bool` | Invert pixel values | | `motion_padding_x` | `int` | Motion padding X (pixels) | | `motion_padding_y` | `int` | Motion padding Y (pixels) | | `padding_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Padding unit | | `pixel_size` | `float` | DMD Pixel size (fraction of line scan period) | | `start_phase` | `float` | DMD Start phase (fraction of line scan period) | | `dmd_curtain` | `List[float]` | DMD Curtain (fraction of DMD scan period) | | `line_shear_anchors` | `List[float]` | Line shear anchors at top and bottom of field of view (pixels) | | `line_shear_anchors_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Line shear anchors unit | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Disc Description of a running disc (i.e. MindScope Disc) | Field | Type | Title (Description) | |-------|------|-------------| | `radius` | `decimal.Decimal` | Radius (cm) | | `radius_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | radius unit | | `output` | Optional[[DaqChannelType](../aind_data_schema_models/devices.md#daqchanneltype)] | (analog or digital electronics) | | `encoder` | `Optional[str]` | Encoder (Encoder hardware type) | | `decoder` | `Optional[str]` | Decoder (Decoder chip type) | | `encoder_firmware` | Optional[[Software](identifiers.md#software)] | Encoder firmware (Firmware to read from decoder chip counts) | | `surface_material` | `Optional[str]` | Surface material | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Enclosure Description of an enclosure | Field | Type | Title (Description) | |-------|------|-------------| | `size` | [Scale](coordinates.md#scale) | Size | | `size_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Size unit | | `internal_material` | `Optional[str]` | Internal material | | `external_material` | `str` | External material | | `grounded` | `bool` | Grounded | | `laser_interlock` | `bool` | Laser interlock | | `air_filtration` | `bool` | Air filtration | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### EphysAssembly Named assembly for combining a manipulator and extracellular ephys probes | Field | Type | Title (Description) | |-------|------|-------------| | `name` | `str` | Ephys assembly name | | `manipulator` | [Manipulator](#manipulator) | Manipulator | | `probes` | List[[EphysProbe](#ephysprobe)] | Probes that are held by this module | ### EphysProbe Probe used in an extracellular ephys experiment | Field | Type | Title (Description) | |-------|------|-------------| | `probe_model` | [ProbeModel](../aind_data_schema_models/devices.md#probemodel) | Probe model | | `headstage` | Optional[[Device](#device)] | Headstage for this probe | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### FiberAssembly Module for inserted fiber photometry recording | Field | Type | Title (Description) | |-------|------|-------------| | `name` | `str` | Fiber assembly name | | `manipulator` | [Manipulator](#manipulator) | Manipulator | | `fibers` | List[[FiberProbe](#fiberprobe)] | Probes that are held by this module | ### FiberPatchCord Description of a patch cord | Field | Type | Title (Description) | |-------|------|-------------| | `core_diameter` | `decimal.Decimal` | Core diameter (um) | | `numerical_aperture` | `decimal.Decimal` | Numerical aperture | | `photobleaching_date` | `Optional[datetime.date]` | Photobleaching date | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### FiberProbe Description of a fiber optic probe | Field | Type | Title (Description) | |-------|------|-------------| | `core_diameter` | `decimal.Decimal` | Core diameter (um) | | `core_diameter_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Core diameter unit | | `numerical_aperture` | `decimal.Decimal` | Numerical aperture | | `ferrule_material` | Optional[[FerruleMaterial](../aind_data_schema_models/devices.md#ferrulematerial)] | Ferrule material | | `active_length` | `Optional[decimal.Decimal]` | Active length (mm) (Length of taper) | | `total_length` | `decimal.Decimal` | Total length (mm) | | `length_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Length unit | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Filter Filter used in a light path | Field | Type | Title (Description) | |-------|------|-------------| | `filter_type` | [FilterType](../aind_data_schema_models/devices.md#filtertype) | Type of filter | | `manufacturer` | [Organization](../aind_data_schema_models/organizations.md#organization) | Manufacturer | | `cut_off_wavelength` | `Optional[int]` | Cut-off wavelength (nm) | | `cut_on_wavelength` | `Optional[int]` | Cut-on wavelength (nm) | | `center_wavelength` | `int or List[int] or NoneType` | Center wavelength (nm) (Single wavelength or list of wavelengths for MULTIBAND or MULTI_NOTCH filters) | | `wavelength_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Wavelength unit | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### HarpDevice DAQ that uses the Harp protocol for synchronization and data transmission | Field | Type | Title (Description) | |-------|------|-------------| | `manufacturer` | [Organization](../aind_data_schema_models/organizations.md#organization) | Manufacturer | | `harp_device_type` | [HarpDeviceType](../aind_data_schema_models/harp_types.md#harpdevicetype) | Type of Harp device | | `core_version` | `Optional[str]` | Core version | | `tag_version` | `Optional[str]` | Tag version | | `data_interface` | [DataInterface](../aind_data_schema_models/devices.md#datainterface) | Data interface | | `is_clock_generator` | `bool` | Is Clock Generator | | `channels` | List[[DAQChannel](#daqchannel)] | DAQ channels | | `firmware_version` | `Optional[str]` | Firmware version | | `hardware_version` | `Optional[str]` | Hardware version | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Lamp Description of a Lamp lightsource | Field | Type | Title (Description) | |-------|------|-------------| | `wavelength_min` | `Optional[int]` | Wavelength minimum (nm) | | `wavelength_max` | `Optional[int]` | Wavelength maximum (nm) | | `wavelength_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Wavelength unit | | `temperature` | `Optional[int]` | Temperature (K) | | `temperature_unit` | Optional[[TemperatureUnit](../aind_data_schema_models/units.md#temperatureunit)] | Temperature unit | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Laser Laser module with a specific wavelength (may be a sub-component of a larger assembly) | Field | Type | Title (Description) | |-------|------|-------------| | `manufacturer` | [Organization](../aind_data_schema_models/organizations.md#organization) | Manufacturer | | `wavelength` | `int` | Wavelength (nm) | | `wavelength_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Wavelength unit | | `coupling` | Optional[[Coupling](../aind_data_schema_models/devices.md#coupling)] | Coupling | | `coupling_efficiency` | `Optional[decimal.Decimal]` | Coupling efficiency (percent) | | `coupling_efficiency_unit` | `"percent"` | Coupling efficiency unit | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### LaserAssembly Named assembly combining a manipulator, lasers, collimator, and fibers | Field | Type | Title (Description) | |-------|------|-------------| | `name` | `str` | Laser assembly name | | `manipulator` | [Manipulator](#manipulator) | Manipulator | | `lasers` | List[[Laser](#laser)] | Lasers connected to this module | | `collimator` | [Device](#device) | Collimator | | `fiber` | [FiberPatchCord](#fiberpatchcord) | Fiber patch | ### Lens Lens | Field | Type | Title (Description) | |-------|------|-------------| | `manufacturer` | [Organization](../aind_data_schema_models/organizations.md#organization) | Manufacturer | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### LickSpout Description of a lick spout | Field | Type | Title (Description) | |-------|------|-------------| | `spout_diameter` | `decimal.Decimal` | Spout diameter (mm) | | `spout_diameter_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Spout diameter unit | | `solenoid_valve` | [Device](#device) | Solenoid valve | | `lick_sensor` | [Device](#device) or [HarpDevice](#harpdevice) | Lick sensor | | `lick_sensor_type` | Optional[[LickSensorType](../aind_data_schema_models/devices.md#licksensortype)] | Lick sensor type | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### LickSpoutAssembly Description of multiple lick spouts, possibly mounted on a stage | Field | Type | Title (Description) | |-------|------|-------------| | `name` | `str` | Lick spout assembly name | | `lick_spouts` | List[[LickSpout](#lickspout)] | Water spouts | | `motorized_stage` | Optional[[MotorizedStage](#motorizedstage)] | Motorized stage | ### LightAssembly Named assembly of a light source and lens | Field | Type | Title (Description) | |-------|------|-------------| | `name` | `str` | Light assembly name | | `light` | [Laser](#laser) or [LightEmittingDiode](#lightemittingdiode) or [Lamp](#lamp) | | | `lens` | [Lens](#lens) | Lens | | `filter` | Optional[[Filter](#filter)] | Filter | ### LightEmittingDiode Description of a Light Emitting Diode (LED) device | Field | Type | Title (Description) | |-------|------|-------------| | `manufacturer` | [Organization](../aind_data_schema_models/organizations.md#organization) | Manufacturer | | `wavelength` | `int` | Wavelength (nm) | | `wavelength_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Wavelength unit | | `bandwidth` | `Optional[int]` | Bandwidth (FWHM) | | `bandwidth_unit` | Optional[[SizeUnit](../aind_data_schema_models/units.md#sizeunit)] | Bandwidth unit | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Manipulator Manipulator used on a dome module | Field | Type | Title (Description) | |-------|------|-------------| | `manufacturer` | [Organization](../aind_data_schema_models/organizations.md#organization) | Manufacturer | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Microscope Description of a microscope | Field | Type | Title (Description) | |-------|------|-------------| | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Monitor Description of visual display for visual stimuli | Field | Type | Title (Description) | |-------|------|-------------| | `manufacturer` | [Organization](../aind_data_schema_models/organizations.md#organization) | Manufacturer | | `refresh_rate` | `int` | Refresh rate (Hz) | | `width` | `int` | Width (pixels) | | `height` | `int` | Height (pixels) | | `size_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Size unit | | `viewing_distance` | `decimal.Decimal` | Viewing distance (cm) | | `viewing_distance_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Viewing distance unit | | `contrast` | `Optional[int]` | Contrast (Monitor's contrast setting) | | `contrast_unit` | Optional[[UnitlessUnit](../aind_data_schema_models/units.md#unitlessunit)] | Contrast unit | | `brightness` | `Optional[int]` | Brightness (Monitor's brightness setting) | | `brightness_unit` | Optional[[UnitlessUnit](../aind_data_schema_models/units.md#unitlessunit)] | Brightness unit | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | | `relative_position` | List[[AnatomicalRelative](../aind_data_schema_models/coordinates.md#anatomicalrelative)] | Relative position | | `coordinate_system` | Optional[[CoordinateSystem](coordinates.md#coordinatesystem)] | Device coordinate system | | `transform` | Optional[List[[Translation](coordinates.md#translation) or [Rotation](coordinates.md#rotation) or [Scale](coordinates.md#scale) or [Affine](coordinates.md#affine)]] | Device to instrument transform (Position and orientation of the device in the instrument coordinate system) | ### MotorizedStage Description of motorized stage | Field | Type | Title (Description) | |-------|------|-------------| | `travel` | `decimal.Decimal` | Travel of device (mm) | | `travel_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Travel unit | | `firmware` | Optional[[Software](identifiers.md#software)] | Firmware | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### MyomatrixArray Description of a Myomatrix array | Field | Type | Title (Description) | |-------|------|-------------| | `array_type` | [MyomatrixArrayType](../aind_data_schema_models/devices.md#myomatrixarraytype) | Array type | | `threads` | List[[MyomatrixThread](#myomatrixthread)] | Array threads | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### MyomatrixContact Description of a contact on a myomatrix thread | Field | Type | Title (Description) | |-------|------|-------------| | `body_part` | [MouseAnatomyModel](../aind_data_schema_models/external.md#mouseanatomymodel) | Body part of contact insertion (Use MouseBodyParts) | | `relative_position` | [AnatomicalRelative](../aind_data_schema_models/coordinates.md#anatomicalrelative) | Relative position (Position relative to procedures coordinate system) | | `muscle` | [MouseAnatomyModel](../aind_data_schema_models/external.md#mouseanatomymodel) | Muscle of contact insertion (Use MouseEmgMuscles) | | `in_muscle` | `bool` | In muscle | ### MyomatrixThread Description of a thread of a myomatrix array | Field | Type | Title (Description) | |-------|------|-------------| | `ground_electrode_location` | [MouseAnatomyModel](../aind_data_schema_models/external.md#mouseanatomymodel) | Location of ground electrode (Use GroundWireLocations) | | `contacts` | List[[MyomatrixContact](#myomatrixcontact)] | Contacts | ### NeuropixelsBasestation PXI-based Neuropixels DAQ | Field | Type | Title (Description) | |-------|------|-------------| | `basestation_firmware_version` | `str` | Basestation firmware version | | `bsc_firmware_version` | `str` | Basestation connect board firmware | | `slot` | `int` | Slot number for this basestation | | `ports` | List[[ProbePort](#probeport)] | Basestation ports | | `data_interface` | [DataInterface](../aind_data_schema_models/devices.md#datainterface) | | | `manufacturer` | [Organization](../aind_data_schema_models/organizations.md#organization) | | | `channels` | List[[DAQChannel](#daqchannel)] | DAQ channels | | `firmware_version` | `Optional[str]` | Firmware version | | `hardware_version` | `Optional[str]` | Hardware version | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Objective Description of an objective device | Field | Type | Title (Description) | |-------|------|-------------| | `numerical_aperture` | `decimal.Decimal` | Numerical aperture (in air) | | `magnification` | `decimal.Decimal` | Magnification | | `immersion` | [ImmersionMedium](../aind_data_schema_models/devices.md#immersionmedium) | Immersion | | `objective_type` | Optional[[ObjectiveType](../aind_data_schema_models/devices.md#objectivetype)] | Objective type | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Olfactometer Description of an olfactometer for odor stimuli | Field | Type | Title (Description) | |-------|------|-------------| | `manufacturer` | [Organization](../aind_data_schema_models/organizations.md#organization) | Manufacturer | | `harp_device_type` | [HarpDeviceType](../aind_data_schema_models/harp_types.md#harpdevicetype) | Type of Harp device | | `channels` | List[[OlfactometerChannel](#olfactometerchannel)] | | | `core_version` | `Optional[str]` | Core version | | `tag_version` | `Optional[str]` | Tag version | | `data_interface` | [DataInterface](../aind_data_schema_models/devices.md#datainterface) | Data interface | | `is_clock_generator` | `bool` | Is Clock Generator | | `firmware_version` | `Optional[str]` | Firmware version | | `hardware_version` | `Optional[str]` | Hardware version | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### OlfactometerChannel description of a Olfactometer channel | Field | Type | Title (Description) | |-------|------|-------------| | `channel_index` | `int` | Channel index | | `channel_type` | [OlfactometerChannelType](#olfactometerchanneltype) | Channel type | | `flow_capacity` | `int` | Flow capacity | | `flow_unit` | `str` | Flow unit | ### OlfactometerChannelType Olfactometer channel types | Name | Value | |------|-------| | `ODOR` | `Odor` | | `CARRIER` | `Carrier` | ### OpenEphysAcquisitionBoard Multichannel electrophysiology DAQ | Field | Type | Title (Description) | |-------|------|-------------| | `ports` | List[[ProbePort](#probeport)] | Acquisition board ports | | `data_interface` | `"USB"` | | | `manufacturer` | [Organization](../aind_data_schema_models/organizations.md#organization) | | | `channels` | List[[DAQChannel](#daqchannel)] | DAQ channels | | `firmware_version` | `Optional[str]` | Firmware version | | `hardware_version` | `Optional[str]` | Hardware version | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### PatchClampEphysAssembly Assembly combining a manipulator and headstage used for Patch clamp ephys | Field | Type | Title (Description) | |-------|------|-------------| | `name` | `str` | Patch clamp Assembly Name | | `manipulator` | [Manipulator](#manipulator) | Manipulator | | `headstage` | [Device](#device) | Headstage | ### PockelsCell Description of a Pockels Cell | Field | Type | Title (Description) | |-------|------|-------------| | `polygonal_scanner` | `Optional[str]` | Polygonal scanner (Must match name of Polygonal scanner) | | `on_time` | `Optional[decimal.Decimal]` | On time (fraction of cycle) | | `off_time` | `Optional[decimal.Decimal]` | Off time (fraction of cycle) | | `time_setting_unit` | [UnitlessUnit](../aind_data_schema_models/units.md#unitlessunit) | Time setting unit | | `beam_modulation` | `Optional[decimal.Decimal]` | Beam modulation (V) | | `beam_modulation_unit` | Optional[[VoltageUnit](../aind_data_schema_models/units.md#voltageunit)] | Beam modulation unit | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### PolygonalScanner Description of a Polygonal scanner | Field | Type | Title (Description) | |-------|------|-------------| | `speed` | `int` | Speed (rpm) | | `speed_unit` | [SpeedUnit](../aind_data_schema_models/units.md#speedunit) | Speed unit | | `number_faces` | `int` | Number of faces | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### ProbePort Port for a probe connection | Field | Type | Title (Description) | |-------|------|-------------| | `index` | `int` | One-based port index | | `probes` | `List[str]` | Names of probes connected to this port | ### Scanner Description of a MRI Scanner | Field | Type | Title (Description) | |-------|------|-------------| | `magnetic_strength` | `float` | Magnetic strength (T) | | `magnetic_strength_unit` | [MagneticFieldUnit](../aind_data_schema_models/units.md#magneticfieldunit) | Magnetic strength unit | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### ScanningStage Description of a scanning motorized stages | Field | Type | Title (Description) | |-------|------|-------------| | `stage_axis_direction` | [StageAxisDirection](../aind_data_schema_models/devices.md#stageaxisdirection) | Direction of stage axis | | `stage_axis_name` | [AxisName](../aind_data_schema_models/coordinates.md#axisname) | Name of stage axis | | `travel` | `decimal.Decimal` | Travel of device (mm) | | `travel_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Travel unit | | `firmware` | Optional[[Software](identifiers.md#software)] | Firmware | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Speaker Description of a speaker for auditory stimuli | Field | Type | Title (Description) | |-------|------|-------------| | `manufacturer` | [Organization](../aind_data_schema_models/organizations.md#organization) | Manufacturer | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | | `relative_position` | List[[AnatomicalRelative](../aind_data_schema_models/coordinates.md#anatomicalrelative)] | Relative position | | `coordinate_system` | Optional[[CoordinateSystem](coordinates.md#coordinatesystem)] | Device coordinate system | | `transform` | Optional[List[[Translation](coordinates.md#translation) or [Rotation](coordinates.md#rotation) or [Scale](coordinates.md#scale) or [Affine](coordinates.md#affine)]] | Device to instrument transform (Position and orientation of the device in the instrument coordinate system) | ### Treadmill Description of treadmill platform | Field | Type | Title (Description) | |-------|------|-------------| | `treadmill_width` | `decimal.Decimal` | Width of treadmill (mm) | | `width_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Width unit | | `encoder` | Optional[[Device](#device)] | Encoder | | `pulse_per_revolution` | `Optional[int]` | Pulse per revolution | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Tube Description of a tube platform | Field | Type | Title (Description) | |-------|------|-------------| | `diameter` | `decimal.Decimal` | Diameter | | `diameter_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Diameter unit | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes | ### Wheel Description of a running wheel | Field | Type | Title (Description) | |-------|------|-------------| | `radius` | `decimal.Decimal` | Radius (mm) | | `width` | `decimal.Decimal` | Width (mm) | | `size_unit` | [SizeUnit](../aind_data_schema_models/units.md#sizeunit) | Size unit | | `encoder` | [Device](#device) | Encoder | | `pulse_per_revolution` | `int` | Pulse per revolution | | `magnetic_brake` | [Device](#device) | Magnetic brake | | `torque_sensor` | [Device](#device) | Torque sensor | | `name` | `str` | Device name | | `serial_number` | `Optional[str]` | Serial number | | `manufacturer` | Optional[[Organization](../aind_data_schema_models/organizations.md#organization)] | Manufacturer | | `model` | `Optional[str]` | Model | | `additional_settings` | `Optional[dict]` | Additional parameters | | `notes` | `Optional[str]` | Notes |